PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00205g01217.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 323aa    MW: 36599.1 Da    PI: 8.548
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00205g01217.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH499.6e-16242267126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +ktelC+ +++tG C+yGd+C+FaHg
  Peaxi162Scf00205g01217.1 242 FKTELCNKWQETGACPYGDSCQFAHG 267
                               79***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-19236274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-11238273IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-9241268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.408241269IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-13242267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-11275307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8275309IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291279307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MQRENISTAG YGGELFNFNT SPPSSPSFFK QPNTAFDMTS LYSSTLFPTT PRFSNSQGLI  60
NQHYHEDLME RYNRVLTQLL ETEKKTLALR QENINLKMAN FNLNNRLSLL LKASTEYYAT  120
SVYGPSSGLN LGLDSLVDGL QRMSVNVGEE DTSSEGHTWE DRHQSPTSVM DSGRVEGVDR  180
VVLPKSISVR SNGYLKTVHA GGSKSQNQSK SDKAKAQRVY VKGDTKKEEQ PLELEVYNQG  240
MFKTELCNKW QETGACPYGD SCQFAHGIQE LRPVLRHPRY KTEVCRMVLN GDPCPYGHRC  300
HFRHTLTDQE KLMRSLNTRS LKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-22242304466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754445e-91HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774204.11e-162PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_016470581.11e-162PREDICTED: zinc finger CCCH domain-containing protein 15-like
TrEMBLM1D0A81e-149M1D0A8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000785221e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-61C3H family protein